command line Search Results


gene set enrichment analysis command line  (Broad Institute Inc)
90
Broad Institute Inc gene set enrichment analysis command line
(A) <t>GSEA</t> analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.5<Normalized enrichment score (NES) or NES>1.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.
Gene Set Enrichment Analysis Command Line, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/gene+set+enrichment+analysis+command+line/bio_rxiv__2025__07__21__665900-227-9-21
Average 90 stars, based on 1 article reviews
gene set enrichment analysis command line - by Bioz Stars, 2026-09
90/100 stars
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templatized c++ command line parser version 1.2  (SourceForge net)
90
SourceForge net templatized c++ command line parser version 1.2
(A) <t>GSEA</t> analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.5<Normalized enrichment score (NES) or NES>1.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.
Templatized C++ Command Line Parser Version 1.2, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/templatized+c+++command+line+parser+version+1+2/pmc04393625-214-15-25
Average 90 stars, based on 1 article reviews
templatized c++ command line parser version 1.2 - by Bioz Stars, 2026-09
90/100 stars
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command-line interface  (Panoptes Pharma GmbH)
90
Panoptes Pharma GmbH command-line interface
Further resources relevant to developing a Zooniverse citizen science project
Command Line Interface, supplied by Panoptes Pharma GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/command+line+interface/pmc10245346-32-0-0
Average 90 stars, based on 1 article reviews
command-line interface - by Bioz Stars, 2026-09
90/100 stars
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analysis/synthesis super-vp command-line tool  (IRCAM GmbH)
90
IRCAM GmbH analysis/synthesis super-vp command-line tool
Further resources relevant to developing a Zooniverse citizen science project
Analysis/Synthesis Super Vp Command Line Tool, supplied by IRCAM GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/analysis+synthesis+super+vp+command+line+tool/pm39467124-351-14-13
Average 90 stars, based on 1 article reviews
analysis/synthesis super-vp command-line tool - by Bioz Stars, 2026-09
90/100 stars
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albacore command line tool  (Oxford Nanopore)
90
Oxford Nanopore albacore command line tool
Further resources relevant to developing a Zooniverse citizen science project
Albacore Command Line Tool, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/albacore+command+line+tool/pm31339905-110-11-8
Average 90 stars, based on 1 article reviews
albacore command line tool - by Bioz Stars, 2026-09
90/100 stars
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cxcalc command line script  (ChemAxon LLC)
90
ChemAxon LLC cxcalc command line script
Further resources relevant to developing a Zooniverse citizen science project
Cxcalc Command Line Script, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/cxcalc+command+line+program/pmc06466478-68-1-6
Average 90 stars, based on 1 article reviews
cxcalc command line script - by Bioz Stars, 2026-09
90/100 stars
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java command line tool  (SourceForge net)
90
SourceForge net java command line tool
Further resources relevant to developing a Zooniverse citizen science project
Java Command Line Tool, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/java+command+line+tool/pmc03279424-163-5-21
Average 90 stars, based on 1 article reviews
java command line tool - by Bioz Stars, 2026-09
90/100 stars
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command line flexx program  (BioSolveIT GmbH)
90
BioSolveIT GmbH command line flexx program
Further resources relevant to developing a Zooniverse citizen science project
Command Line Flexx Program, supplied by BioSolveIT GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/command+line+flexx+program/pm33927988-74-13-17
Average 90 stars, based on 1 article reviews
command line flexx program - by Bioz Stars, 2026-09
90/100 stars
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dnanexus command-line client  (DNAnexus Inc)
90
DNAnexus Inc dnanexus command-line client
Further resources relevant to developing a Zooniverse citizen science project
Dnanexus Command Line Client, supplied by DNAnexus Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/dnanexus+command+line+client/pmc06724669__supp_gr__250357__119_Supplemental_Methods-2-12-12
Average 90 stars, based on 1 article reviews
dnanexus command-line client - by Bioz Stars, 2026-09
90/100 stars
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vina command prompt  (AUTODOCK GmbH)
90
AUTODOCK GmbH vina command prompt
Further resources relevant to developing a Zooniverse citizen science project
Vina Command Prompt, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/vina+command+line/10__1016_slash_j__rechem__2024__101464-145-9-9
Average 90 stars, based on 1 article reviews
vina command prompt - by Bioz Stars, 2026-09
90/100 stars
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auspex command-line interface  (Auspex Pharma)
90
Auspex Pharma auspex command-line interface
Further resources relevant to developing a Zooniverse citizen science project
Auspex Command Line Interface, supplied by Auspex Pharma, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/auspex+command+line+interface/10__1107_slash_s2059798324008519-176-4-4
Average 90 stars, based on 1 article reviews
auspex command-line interface - by Bioz Stars, 2026-09
90/100 stars
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cxcalc command line tool chemaxon jchem version 16.6.13.0  (ChemAxon LLC)
90
ChemAxon LLC cxcalc command line tool chemaxon jchem version 16.6.13.0
Further resources relevant to developing a Zooniverse citizen science project
Cxcalc Command Line Tool Chemaxon Jchem Version 16.6.13.0, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/cxcalc+command+line+tool+chemaxon+jchem+version+16+6+13+0/pm28961788-46-41-41
Average 90 stars, based on 1 article reviews
cxcalc command line tool chemaxon jchem version 16.6.13.0 - by Bioz Stars, 2026-09
90/100 stars
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Image Search Results


(A) GSEA analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.5<Normalized enrichment score (NES) or NES>1.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.

Journal: bioRxiv

Article Title: Differential sensitivity to LINE 1-induced damage contributes to the expansion of Tet2-deficient HSCs upon chronic inflammatory stress

doi: 10.1101/2025.07.21.665900

Figure Lengend Snippet: (A) GSEA analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.51.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.

Article Snippet: For pathway enrichment analysis and data visualization, we performed Gene Set Enrichment Analysis (GSEA) using the GSEA command line (v 4.3.3, Broad Institute) ( ).

Techniques: Expressing

Further resources relevant to developing a Zooniverse citizen science project

Journal: Histochemistry and Cell Biology

Article Title: Online citizen science with the Zooniverse for analysis of biological volumetric data

doi: 10.1007/s00418-023-02204-6

Figure Lengend Snippet: Further resources relevant to developing a Zooniverse citizen science project

Article Snippet: Panoptes command-line interface , github.com/zooniverse/panoptes-cli/blob/master/README.md.

Techniques: Virus